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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
260
ATAC-seq
178
DNase-seq
87
RNA microarray
28
snATAC-seq
27
WGBS
25
pCHi-C
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
470
DNA accessibility
279
DNA binding
38
DNA methylation
16
3D chromatin structure
Target of assay
histone modification
627
histone
324
narrow histone mark
303
broad histone mark
187
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
163
June, 2019
95
February, 2021
81
February, 2023
73
August, 2021
71
August, 2017
52
October, 2019
44
October, 2018
43
December, 2017
39
May, 2022
30
July, 2019
29
March, 2020
26
May, 2019
26
November, 2018
23
May, 2020
21
November, 2019
20
April, 2019
12
November, 2017
11
May, 2023
11
October, 2017
10
April, 2020
8
January, 2021
7
December, 2018
6
September, 2017
5
March, 2019
5
May, 2024
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
Available data
518
bam
464
bed narrowPeak
333
bigWig
249
bigBed narrowPeak
200
fastq
193
bed bed3+
178
bed broadPeak
176
bigBed broadPeak
85
txt
64
xls
52
tagAlign
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
Organism
919
Homo sapiens
Biosample type
922
tissue
508
cell line
415
primary cell
144
in vitro differentiated cells
6
stem cell
Organ
164
kidney
141
pancreas
117
liver
109
heart
96
bone element
66
blood vessel
66
limb
66
vasculature
60
brain
57
adipose tissue
57
connective tissue
50
musculature of body
49
artery
35
eye
19
spleen
18
ureter
14
nerve
13
epithelium
12
skeleton
11
lung
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
890
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
447
GRCh38
399
hg19
Lab
754
AMP-T2D consortium
82
Katalin Susztak, Upenn
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
5
Patrick T. Ellinor, Broad
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
88
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
18
missing controlled_by
assay_slims!
Transcription
assay_title!
whole genome sequencing assay
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
922 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
20
68
1
7
4
3
1
1
4
liver
80
20
2
3
1
1
1
kidney
7
75
13
6
1
1
1
bone element
84
coronary artery
3
36
2
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