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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
54
DNase-seq
8
ATAC-seq
4
Hi-C
1
WGBS
Assay category
66
DNA binding
62
DNA accessibility
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
50
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
Available data
128
bam
110
bed narrowPeak
105
bigWig
102
bigBed narrowPeak
54
bed bed3+
54
bed broadPeak
54
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
133
Homo sapiens
Biosample type
133
tissue
Organ
597
liver
467
pancreas
323
epithelium
262
brain
229
kidney
227
heart
202
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
89
adipose tissue
87
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
110
GRCh38
110
hg19
Lab
133
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
assay_title!
whole genome sequencing assay
month_released!
August, 2018
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
renal pelvis
10
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