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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
92
ChIP-seq
72
ATAC-seq
47
WGBS
18
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
92
DNA binding
18
DNA accessibility
Target of assay
66
histone
66
histone modification
35
narrow histone mark
31
broad histone mark
21
control
5
RNA binding protein
5
transcription factor
Date released
28
October, 2019
26
August, 2017
21
September, 2018
20
June, 2019
6
November, 2017
5
May, 2019
4
August, 2021
Available data
108
bam
86
bigWig
82
bed narrowPeak
53
fastq
38
bigBed narrowPeak
22
bed broadPeak
22
bigBed broadPeak
19
bed bed3+
4
tagAlign
Organism
110
Homo sapiens
Biosample type
110
primary cell
22
in vitro differentiated cells
16
cell line
Organ
110
epithelium
70
pancreas
29
vasculature
27
kidney
24
blood vessel
19
vein
18
connective tissue
14
brain
11
musculature of body
8
heart
6
liver
4
eye
Project
110
AMP
Genome assembly (visualization)
82
GRCh38
80
hg19
Lab
110
AMP-T2D consortium
Audit category:
7
inconsistent ontology term
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
BIOSAMPLE
ASSAY
110 results
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ChIP-seq
DNase-seq
primary cell
endothelial cell of umbilical vein
17
2
pancreatic alpha cell
13
pancreatic beta cell
13
pancreatic ductal cell
13
epithelial cell of proximal tubule
10
1
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