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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
519
ATAC-seq
212
DNase-seq
85
RNA microarray
57
pCHi-C
47
snATAC-seq
34
Hi-C
28
WGBS
21
RRBS
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR genome editing followed by sgRNA sequencing
1
DNAme array
1
MPRA
1
whole genome sequencing assay
Assay category
47
DNA accessibility
Date released
16
January, 2021
11
February, 2021
10
April, 2020
6
August, 2021
2
February, 2023
1
August, 2022
1
May, 2022
Available data
11
fastq
1
bed bed3+
1
txt
Organism
46
Homo sapiens
Biosample type
28
tissue
19
primary cell
Organ
11
pancreas
10
lung
8
blood
8
bodily fluid
6
kidney
1
musculature of body
Project
18
T1D
11
HPAP
10
LungMap
8
AMP
Genome assembly (visualization)
1
hg19
Lab
18
Kyle Gaulton, UCSD
11
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
2
AMP-T2D consortium
Audit category:
13
audit script error
assay_slims!
Transcription
files.platform.term_name!
Illumina NovaSeq 6000
month_released!
December, 2019
BIOSAMPLE
ASSAY
47 results
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snATAC-seq
tissue
lung
10
islet of Langerhans
7
kidney
6
pancreas
4
skeletal muscle tissue
1
primary cell
Langerhans cell
11
peripheral blood mononuclear cell
8
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