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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
ATAC-seq
4
Hi-C
2
pCHi-C
1
snATAC-seq
Assay category
5
DNA accessibility
4
3D chromatin structure
Date released
4
February, 2023
4
July, 2019
2
February, 2021
1
May, 2022
Available data
404
bam
217
fastq
156
bigWig
150
tagAlign
97
bed narrowPeak
86
txt
50
tsv
42
bigBed narrowPeak
37
bed broadPeak
19
bed bedMethyl
19
bigBed bedMethyl
18
bedpe bed3+
16
bigBed broadPeak
16
hic
11
bed bed3+
10
bed bed3
4
bed bedgraph
4
hdf5
4
tar
2
ibed
Organism
11
Homo sapiens
Biosample type
5
primary cell
4
in vitro differentiated cells
1
cell line
1
tissue
Organ
6
connective tissue
3
brain
2
blood vessel
2
epithelium
2
liver
2
vasculature
1
musculature of body
Project
11
AMP
Genome assembly (visualization)
GRCh38
236
hg19
Lab
11
AMP-T2D consortium
2
Struan F.A. Grant, CHOP
Audit category:
2
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
assembly!
GRCh38
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
11 results
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ATAC-seq
Hi-C
pCHi-C
snATAC-seq
primary cell
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
endothelial cell of hepatic sinusoid
1
osteoblast
1
in vitro differentiated cells
immature adipocyte
2
adipocyte
1
preadipocyte
1
cell line
HepG2
1
tissue
skeletal muscle tissue
1
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