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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
56
ChIP-seq
20
ATAC-seq
5
pCHi-C
4
GRO-seq
4
Hi-C
Assay category
56
DNA binding
20
DNA accessibility
Transcription
4
3D chromatin structure
Target of assay
22
control
22
histone
22
histone modification
12
transcription factor
11
broad histone mark
11
narrow histone mark
5
RNA binding protein
Date released
42
May, 2021
9
February, 2023
8
February, 2018
6
March, 2020
5
August, 2017
5
December, 2017
4
February, 2021
4
January, 2018
4
October, 2019
1
August, 2018
1
August, 2021
Available data
26
bam
23
fastq
tagAlign
11
bigWig
7
bedpe bed3+
5
bed bed3
4
bed bed3+
4
bed bedgraph
4
hic
2
bigBed narrowPeak
2
ibed
2
tsv
Organism
89
Homo sapiens
Biosample type
487
tissue
366
primary cell
181
cell line
89
in vitro differentiated cells
5
stem cell
Organ
21
connective tissue
8
embryo
3
epithelium
1
adipose tissue
1
liver
Project
89
AMP
Genome assembly (visualization)
146
hg19
GRCh38
4
hg18
Lab
47
AMP-T2D consortium
42
Kyle Gaulton, UCSD
Struan F.A. Grant, CHOP
Audit category:
11
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
GRCh38
files.file_type!
tagAlign
lab.title!
Struan F.A. Grant, CHOP
BIOSAMPLE
ASSAY
89 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Hi-C
in vitro differentiated cells
embryonic stem cell
38
5
1
adipocyte
5
7
pancreatic endoderm
5
1
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
2
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