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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
294
ChIP-seq
102
ATAC-seq
87
RNA microarray
27
snATAC-seq
25
pCHi-C
16
Hi-C
11
RRBS
11
WGBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
1
DNase-seq
Assay category
Transcription
294
DNA binding
134
DNA accessibility
22
DNA methylation
16
3D chromatin structure
Target of assay
162
control
133
histone
133
histone modification
72
narrow histone mark
61
broad histone mark
2
nucleotide modification
1
RNA binding protein
1
transcription factor
Date released
126
August, 2017
87
February, 2021
67
October, 2019
46
February, 2023
39
May, 2022
31
May, 2020
29
March, 2020
29
October, 2018
25
November, 2017
May, 2019
16
April, 2019
16
July, 2019
12
December, 2017
10
April, 2020
9
August, 2021
9
October, 2017
8
January, 2021
4
December, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
December, 2019
2
January, 2018
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
175
bam
122
tagAlign
100
bed narrowPeak
91
fastq
85
txt
59
bigWig
26
tsv
22
bed broadPeak
11
hic
10
bedpe bed3+
9
bed bedMethyl
9
bigBed bedMethyl
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
582
Homo sapiens
Biosample type
585
tissue
367
primary cell
187
cell line
118
in vitro differentiated cells
5
stem cell
Organ
101
liver
97
pancreas
88
bone element
65
connective tissue
64
adipose tissue
47
brain
35
musculature of body
34
eye
21
kidney
21
limb
20
heart
13
epithelium
11
lung
11
nerve
9
spleen
8
blood vessel
8
vasculature
5
artery
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
553
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
744
hg19
Lab
500
AMP-T2D consortium
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
7
Katalin Susztak, Upenn
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
3
audit script error
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
GRCh38
month_released!
August, 2022
May, 2019
BIOSAMPLE
ASSAY
585 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
pCHi-C
Hi-C
RRBS
WGBS
FAIRE-seq
MeRIP-seq
snDrop-seq
DNase-seq
tissue
islet of Langerhans
46
46
6
4
3
1
1
4
liver
70
20
1
1
1
3
bone element
84
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
1
4
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