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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
310
ChIP-seq
102
ATAC-seq
85
RNA microarray
25
pCHi-C
22
snATAC-seq
15
Hi-C
11
WGBS
10
RRBS
4
MeRIP-seq
3
FAIRE-seq
1
DNase-seq
Assay category
310
DNA binding
Transcription
128
DNA accessibility
21
DNA methylation
15
3D chromatin structure
Target of assay
178
control
134
histone
134
histone modification
73
narrow histone mark
61
broad histone mark
2
nucleotide modification
Date released
126
August, 2017
84
February, 2021
65
October, 2019
46
February, 2023
39
May, 2022
31
May, 2020
29
March, 2020
29
October, 2018
25
November, 2017
23
May, 2019
14
July, 2019
12
December, 2017
11
April, 2019
10
April, 2020
9
October, 2017
8
January, 2021
4
December, 2018
4
November, 2018
4
November, 2020
4
September, 2017
3
March, 2019
2
August, 2021
2
January, 2018
1
August, 2022
1
January, 2019
1
May, 2021
1
November, 2019
Available data
190
bam
122
tagAlign
100
bed narrowPeak
91
fastq
85
txt
59
bigWig
22
bed broadPeak
21
tsv
10
bedpe bed3+
10
hic
8
bed bedMethyl
8
bigBed bedMethyl
5
bed bed3
5
bigBed narrowPeak
1
bed bed3+
1
bedpe
Organism
585
Homo sapiens
Biosample type
588
tissue
353
primary cell
180
cell line
118
in vitro differentiated cells
5
stem cell
Organ
101
liver
99
pancreas
88
bone element
65
connective tissue
64
adipose tissue
50
brain
37
musculature of body
34
eye
26
heart
23
limb
kidney
19
blood vessel
19
vasculature
13
epithelium
11
lung
11
nerve
9
spleen
7
artery
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
556
AMP
22
T1D
10
LungMap
Genome assembly (visualization)
GRCh38
667
hg19
Lab
510
AMP-T2D consortium
40
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
86
inconsistent ontology term
2
audit script error
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
GRCh38
month_released!
June, 2019
organ_slims!
kidney
BIOSAMPLE
ASSAY
588 results
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Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
pCHi-C
snATAC-seq
Hi-C
WGBS
RRBS
MeRIP-seq
FAIRE-seq
DNase-seq
tissue
islet of Langerhans
46
46
4
7
3
1
4
1
liver
70
20
1
1
3
1
bone element
84
subcutaneous abdominal adipose tissue
36
3
skeletal muscle tissue
22
1
1
4
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