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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
152
ChIP-seq
7
WGBS
6
RRBS
3
DNase-seq
2
FAIRE-seq
Assay category
152
DNA binding
13
DNA methylation
5
DNA accessibility
Transcription
Target of assay
96
histone
96
histone modification
60
broad histone mark
54
control
36
narrow histone mark
2
transcription factor
1
RNA binding protein
1
recombinant protein
Date released
162
August, 2017
140
May, 2022
132
May, 2020
129
February, 2021
126
November, 2017
114
May, 2021
93
October, 2019
76
February, 2023
49
August, 2021
45
March, 2020
29
July, 2019
29
October, 2018
24
May, 2019
17
December, 2017
16
April, 2019
16
January, 2021
10
April, 2020
10
November, 2020
9
October, 2017
8
February, 2018
8
January, 2018
8
June, 2019
8
November, 2018
5
December, 2018
4
January, 2019
4
November, 2019
4
October, 2022
4
September, 2017
3
March, 2019
2
December, 2019
1
August, 2018
1
August, 2022
Available data
68
tagAlign
46
fastq
41
bam
26
bigWig
25
bed narrowPeak
22
bed broadPeak
5
bigBed narrowPeak
4
bed bedMethyl
4
bigBed bedMethyl
2
bigBed broadPeak
Organism
169
Homo sapiens
Biosample type
130
tissue
19
in vitro differentiated cells
17
primary cell
4
cell line
Organ
60
connective tissue
41
adipose tissue
37
pancreas
36
liver
26
musculature of body
12
epithelium
3
blood
3
bodily fluid
3
spleen
Project
170
AMP
Genome assembly (visualization)
258
hg19
GRCh38
Lab
170
AMP-T2D consortium
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
GRCh38
organ_slims!
urinary bladder
BIOSAMPLE
ASSAY
170 results
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ChIP-seq
WGBS
RRBS
DNase-seq
FAIRE-seq
tissue
subcutaneous abdominal adipose tissue
36
3
liver
30
3
1
skeletal muscle tissue
22
4
islet of Langerhans
21
1
pancreas
2
1
+ See 3 more…
in vitro differentiated cells
adipocyte
19
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
2
1
2
cell line
GM12878
3
HepG2
1
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