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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
47
ChIP-seq
4
pCHi-C
3
Hi-C
2
ATAC-seq
2
RRBS
1
FAIRE-seq
Assay category
47
DNA binding
Transcription
3
3D chromatin structure
3
DNA accessibility
2
DNA methylation
Target of assay
28
control
19
histone
19
histone modification
10
narrow histone mark
9
broad histone mark
Date released
28
November, 2017
9
October, 2017
8
October, 2019
6
July, 2019
3
March, 2020
3
May, 2019
1
February, 2023
1
May, 2021
Available data
36
tagAlign
28
bam
8
bigWig
6
fastq
3
bed bed3+
3
hdf5
3
tsv
2
bed bedMethyl
2
bed narrowPeak
2
bigBed bedMethyl
1
bed bed3
1
bed broadPeak
1
bigBed narrowPeak
Organism
59
Homo sapiens
Biosample type
52
tissue
7
primary cell
Organ
238
pancreas
229
liver
175
epithelium
112
connective tissue
89
bone element
65
adipose tissue
57
brain
40
musculature of body
36
eye
36
kidney
36
vasculature
34
blood vessel
31
heart
23
limb
15
blood
15
bodily fluid
11
lung
11
nerve
10
vein
9
artery
9
spleen
8
embryo
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
58
AMP
1
T1D
Genome assembly (visualization)
GRCh38
152
hg19
Lab
58
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
GRCh38
BIOSAMPLE
ASSAY
59 results
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ChIP-seq
pCHi-C
Hi-C
ATAC-seq
RRBS
FAIRE-seq
tissue
brain
9
1
1
cingulate gyrus
8
layer of hippocampus
6
substantia nigra
4
caudate nucleus
3
+ See 15 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
choroid plexus epithelial cell
1
1
brain pericyte
1
See all biosamples
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