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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 605ChIP-seq
  • 297ATAC-seq
  • 87RNA microarray
  • 84snATAC-seq
  • 58WGBS
  • 57pCHi-C
  • 32Hi-C
  • 21RRBS
  • 10MeRIP-seq
  • 5DNase-seq
  • 5FAIRE-seq
  • 5GRO-seq
  • 5STARR-seq
  • 4Capture-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 3snDrop-seq
  • 2HiChIP
  • 1CRISPR genome editing followed by sgRNA sequencing
  • 1DNAme array
  • 1MPRA
  • 1whole genome sequencing assay
Assay category
  • 605DNA binding
  • Transcription
  • 391DNA accessibility
  • 80DNA methylation
  • 323D chromatin structure
  • 1DNA sequencing
Target of assay
  • 331control
  • 213histone
  • 213histone modification
  • 109broad histone mark
  • 104narrow histone mark
  • 66transcription factor
  • 14RNA binding protein
  • 5nucleotide modification
  • 2chromatin remodeller
  • 1recombinant protein
Date released
  • 162August, 2017
  • 140May, 2022
  • 132May, 2020
  • 129February, 2021
  • 126November, 2017
  • 114May, 2021
  • 93October, 2019
  • 76February, 2023
  • 49August, 2021
  • 46March, 2020
  • 29July, 2019
  • 29October, 2018
  • 24May, 2019
  • 17December, 2017
  • 16April, 2019
  • 16January, 2021
  • 10April, 2020
  • 10November, 2020
  • 9October, 2017
  • 8February, 2018
  • 8January, 2018
  • 8June, 2019
  • 8November, 2018
  • 5December, 2018
  • 4January, 2019
  • 4November, 2019
  • 4October, 2022
  • 4September, 2017
  • 3March, 2019
  • 2December, 2019
  • 1August, 2018
  • 1August, 2022
Available data
  • 427bam
  • 273fastq
  • 237bigWig
  • 185bed narrowPeak
  • 152tagAlign
  • 101zippedFastqFolder
  • 89txt
  • 56tsv
  • 44bigBed narrowPeak
  • 40bed broadPeak
  • 23bedpe bed3+
  • 22hic
  • 19bed bedMethyl
  • 19bigBed bedMethyl
  • 18bigBed broadPeak
  • 13bed bed3+
  • 10bed bed3
  • 7bed bedgraph
  • 4hdf5
  • 4tar
  • 3cool
  • 2ibed
  • 1bedpe
  • 1vcf
Organism
  • 1282Homo sapiens
Biosample type
  • 609tissue
  • 368primary cell
  • 187cell line
  • 118in vitro differentiated cells
  • 5stem cell
Organ
  • 238pancreas
  • 229liver
  • 175epithelium
  • 112connective tissue
  • 89bone element
  • 65adipose tissue
  • 57brain
  • 40musculature of body
  • 36eye
  • 36kidney
  • 36vasculature
  • 34blood vessel
  • 31heart
  • 23limb
  • 15blood
  • 15bodily fluid
  • 11lung
  • 11nerve
  • 10vein
  • 9artery
  • 9spleen
  • 8embryo
  • 5gonad
  • 5ovary
  • 4skeleton
  • 2intestine
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1pituitary gland
  • 1skin of body
  • 1small intestine
  • 1stomach
  • 1urinary bladder
Project
  • 1089AMP
  • 137HPAP
  • 51T1D
  • 10LungMap
Genome assembly (visualization)
  • 1810hg19
  • GRCh38
  • 5hg18
Lab
  • 923AMP-T2D consortium
  • 144Kyle Gaulton, UCSD
  • 137Klaus Kaestner, Upenn
  • 27Bing Ren, UCSD
  • 20Karen Mohlke, UNC
  • 10Rohit N. Kulkarni, M.D., Ph.D.
  • 10Xin Sun, UCSD
  • 7Katalin Susztak, Upenn
  • 7Struan F.A. Grant, CHOP
  • 1Maike Sander, UCSD
  • 1Mark McCarthy, Oxford
Audit category:
  • 152inconsistent ontology term
  • 35audit script error
Audit category:
  • 10missing controlled_by
Audit category:
  • 4inconsistent control read length
  • 2inconsistent control run_type
assay_slims!
  • Transcription
assembly!
  • GRCh38
BIOSAMPLE
ASSAY

1287 results

search-icontable-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
RNA microarray
snATAC-seq
WGBS
pCHi-C
Hi-C
RRBS
MeRIP-seq
DNase-seq
FAIRE-seq
GRO-seq
STARR-seq
Capture-C
CRISPR genome editing followed by DNA sequencing
snDrop-seq
HiChIP
CRISPR genome editing followed by sgRNA sequencing
DNAme array
MPRA
...and 1 more
tissue
islet of Langerhans4646743141
liver70203111
bone element84
subcutaneous abdominal adipose tissue363
skeletal muscle tissue22114
primary cell
pancreatic alpha cell622311
Langerhans cell48
CD8-positive, alpha-beta T cell3321
pancreatic beta cell613161
naive thymus-derived CD4-positive, alpha-beta T cell2221
cell line
HepG2117222
EndoC_BH1218162321
GM1287861
Panc17
HEK293T2
in vitro differentiated cells
embryonic stem cell3861
adipocyte1981
neural progenitor cell8
pancreatic endoderm51
chondrocyte5
stem cell
hESC1
mesenchymal stem cell1
mesendoderm1
neural progenitor cell (neural stem cell)1
trophoblast1
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