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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ChIP-seq
4
GRO-seq
2
pCHi-C
Assay category
77
DNA binding
Transcription
Target of assay
35
histone
35
histone modification
30
control
20
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
38
May, 2021
19
August, 2017
9
August, 2021
8
February, 2018
4
January, 2018
3
December, 2017
1
August, 2018
1
March, 2020
Available data
25
bam
23
tagAlign
21
fastq
5
bigWig
1
bed narrowPeak
1
bedpe bed3+
1
tsv
Organism
83
Homo sapiens
Biosample type
617
tissue
266
primary cell
89
cell line
83
in vitro differentiated cells
4
stem cell
Organ
20
connective tissue
6
embryo
2
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
83
AMP
Genome assembly (visualization)
hg19
126
GRCh38
4
hg18
Lab
46
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
hg19
audit.ERROR.category!
inconsistent ontology term
award.project!
LungMap
BIOSAMPLE
ASSAY
83 results
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ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
embryonic stem cell
38
1
adipocyte
19
neural progenitor cell
9
pancreatic endoderm
5
1
definitive endodermal cell
1
1
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