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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
55
ChIP-seq
32
ATAC-seq
11
snATAC-seq
10
MeRIP-seq
4
WGBS
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
Hi-C
1
pCHi-C
Assay category
55
DNA binding
43
DNA accessibility
Transcription
4
DNA methylation
1
3D chromatin structure
Target of assay
51
control
9
histone
9
histone modification
5
broad histone mark
5
nucleotide modification
4
narrow histone mark
Date released
29
August, 2017
17
May, 2021
14
February, 2023
11
October, 2018
10
November, 2020
10
October, 2019
8
January, 2021
4
November, 2018
4
September, 2017
3
August, 2021
June, 2019
2
March, 2019
2
November, 2019
1
August, 2022
1
March, 2020
1
May, 2019
Available data
46
bam
33
fastq
5
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
4
bigWig
1
bed broadPeak
1
bedpe bed3+
1
tsv
Organism
115
Homo sapiens
Biosample type
70
tissue
34
cell line
12
primary cell
1
in vitro differentiated cells
Organ
135
liver
117
pancreas
104
heart
104
kidney
100
brain
85
bone element
85
connective tissue
63
adipose tissue
61
blood vessel
61
vasculature
54
epithelium
44
artery
23
limb
18
musculature of body
14
blood
14
bodily fluid
11
lung
11
nerve
11
spleen
8
embryo
7
eye
5
gonad
5
ovary
5
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
96
AMP
HPAP
21
T1D
Genome assembly (visualization)
hg19
215
GRCh38
Lab
83
AMP-T2D consortium
21
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
1
Bing Ren, UCSD
1
Maike Sander, UCSD
1
Mark McCarthy, Oxford
Audit category:
26
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
assembly!
hg19
award.project!
HPAP
month_released!
June, 2019
BIOSAMPLE
ASSAY
117 results
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Clear Filters
ChIP-seq
ATAC-seq
snATAC-seq
MeRIP-seq
WGBS
Capture-C
CRISPR genome editing followed by sgRNA sequencing
Hi-C
pCHi-C
tissue
islet of Langerhans
19
16
7
4
1
body of pancreas
9
2
pancreas
3
4
2
1
endocrine pancreas
2
cell line
EndoC_BH1
2
16
6
2
1
Panc1
7
primary cell
pancreatic alpha cell
6
pancreatic beta cell
6
in vitro differentiated cells
pancreatic PP cell
1
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