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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
79
ChIP-seq
4
GRO-seq
3
pCHi-C
Assay category
79
DNA binding
Transcription
Target of assay
35
histone
35
histone modification
32
control
20
broad histone mark
15
narrow histone mark
12
transcription factor
5
RNA binding protein
Date released
38
May, 2021
19
August, 2017
9
August, 2021
8
February, 2018
5
December, 2017
4
January, 2018
2
March, 2020
1
August, 2018
Available data
27
bam
23
fastq
23
tagAlign
5
bigWig
2
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
86
Homo sapiens
Biosample type
703
tissue
278
primary cell
121
cell line
86
in vitro differentiated cells
5
stem cell
Organ
20
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
86
AMP
Genome assembly (visualization)
hg19
138
GRCh38
4
hg18
Lab
49
AMP-T2D consortium
37
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
hg19
award.project!
LungMap
award.project!!
LungMap
BIOSAMPLE
ASSAY
86 results
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ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
embryonic stem cell
38
1
adipocyte
19
neural progenitor cell
9
pancreatic endoderm
5
1
Hepatic endoderm
2
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