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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
74
ChIP-seq
4
GRO-seq
3
pCHi-C
Assay category
74
DNA binding
Transcription
Target of assay
35
histone
35
histone modification
32
control
20
broad histone mark
15
narrow histone mark
12
transcription factor
RNA binding protein
Date released
33
May, 2021
19
August, 2017
9
August, 2021
8
February, 2018
5
December, 2017
4
January, 2018
2
March, 2020
1
August, 2018
Available data
27
bam
23
fastq
23
tagAlign
5
bigWig
2
tsv
1
bed narrowPeak
1
bedpe bed3+
Organism
81
Homo sapiens
Biosample type
697
tissue
278
primary cell
118
cell line
81
in vitro differentiated cells
5
stem cell
Organ
20
connective tissue
8
embryo
4
epithelium
1
adipose tissue
1
liver
1
pancreas
Project
81
AMP
Genome assembly (visualization)
hg19
132
GRCh38
4
hg18
Lab
49
AMP-T2D consortium
32
Kyle Gaulton, UCSD
Audit category:
3
inconsistent ontology term
Audit category:
1
missing controlled_by
assay_slims!
Transcription
assembly!
hg19
award.project!
LungMap
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
81 results
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ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
embryonic stem cell
33
1
adipocyte
19
neural progenitor cell
9
pancreatic endoderm
5
1
Hepatic endoderm
2
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