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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
329
ChIP-seq
11
ATAC-seq
5
DNase-seq
1
WGBS
Assay category
329
DNA binding
Transcription
16
DNA accessibility
1
DNA methylation
Target of assay
286
transcription factor
81
recombinant protein
51
RNA binding protein
39
histone modification
38
histone
22
broad histone mark
21
chromatin remodeller
16
narrow histone mark
2
other context
2
other post-translational modification
1
control
Date released
208
November, 2017
52
November, 2018
50
December, 2017
19
August, 2017
9
February, 2021
6
October, 2019
2
June, 2019
Available data
377
bam
375
bed narrowPeak
366
bigWig
338
fastq
326
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
tagAlign
11
bed bed3+
1
bed bed3
1
bed bedMethyl
1
bigBed bedMethyl
Organism
346
Homo sapiens
Biosample type
254
cell line
75
tissue
14
in vitro differentiated cells
3
primary cell
Organ
338
liver
221
pancreas
193
kidney
192
heart
143
epithelium
129
vasculature
125
blood vessel
123
brain
92
limb
91
connective tissue
70
artery
54
blood
54
bodily fluid
47
musculature of body
27
nerve
25
adipose tissue
18
ureter
16
spleen
15
embryo
12
vein
8
bone element
8
skeleton
6
eye
Project
346
AMP
Genome assembly (visualization)
433
hg19
346
GRCh38
Lab
346
AMP-T2D consortium
Audit category:
27
inconsistent control
1
inconsistent ontology term
1
inconsistent replicate
Audit category:
5
missing controlled_by
Audit category:
14
inconsistent control read length
6
inconsistent control run_type
assay_slims!
Transcription
files.file_type!
tagAlign
BIOSAMPLE
ASSAY
346 results
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ChIP-seq
ATAC-seq
DNase-seq
WGBS
cell line
HepG2
252
1
1
tissue
liver
56
2
right lobe of liver
7
1
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
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in vitro differentiated cells
hepatocyte
14
primary cell
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
hepatocyte
1
See all biosamples
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