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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ChIP-seq
12
ATAC-seq
Assay category
15
DNA binding
Transcription
12
DNA accessibility
Target of assay
11
histone
11
histone modification
7
narrow histone mark
4
broad histone mark
3
transcription factor
1
control
Date released
9
December, 2017
8
February, 2021
6
February, 2018
4
February, 2023
Available data
23
bam
22
bed narrowPeak
15
fastq
14
bigWig
4
bed bed3
3
bed bed3+
Organism
27
Homo sapiens
Biosample type
15
in vitro differentiated cells
12
tissue
Organ
462
liver
252
pancreas
165
epithelium
152
brain
118
heart
117
kidney
114
connective tissue
107
vasculature
101
blood vessel
92
limb
67
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
27
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
27
AMP
Genome assembly (visualization)
27
hg19
23
GRCh38
1
hg18
Lab
27
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
audit.ERROR.category!
inconsistent replicate
BIOSAMPLE
ASSAY
27 results
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ChIP-seq
ATAC-seq
in vitro differentiated cells
pancreatic endoderm
13
Hepatic endoderm
2
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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