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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
516
ChIP-seq
152
DNase-seq
122
ATAC-seq
11
Hi-C
9
RRBS
3
FAIRE-seq
1
snATAC-seq
Assay category
Transcription
516
DNA binding
278
DNA accessibility
11
3D chromatin structure
9
DNA methylation
Target of assay
432
histone modification
431
histone
235
narrow histone mark
196
broad histone mark
81
transcription factor
22
RNA binding protein
3
control
2
chromatin remodeller
Date released
155
October, 2019
147
June, 2019
93
May, 2019
91
August, 2017
65
April, 2019
45
October, 2018
39
May, 2022
36
December, 2017
33
February, 2023
27
May, 2020
21
November, 2019
November, 2018
13
July, 2019
13
October, 2017
11
March, 2020
8
February, 2021
6
January, 2019
November, 2017
3
December, 2018
3
March, 2019
2
January, 2018
2
September, 2017
1
August, 2021
Available data
754
bed narrowPeak
709
bam
707
bigWig
471
bigBed narrowPeak
181
bed broadPeak
180
bed bed3+
180
fastq
151
bigBed broadPeak
99
tagAlign
11
hic
9
bed bedMethyl
9
bedpe bed3+
9
bigBed bedMethyl
5
bed bed3
1
bedpe
1
tagAlign bed3+
1
tsv
1
txt
Organism
808
Homo sapiens
Biosample type
814
tissue
365
primary cell
170
in vitro differentiated cells
106
cell line
3
stem cell
Organ
139
pancreas
126
brain
109
liver
100
heart
92
limb
90
kidney
66
blood vessel
66
vasculature
57
musculature of body
30
eye
27
artery
27
nerve
26
adipose tissue
26
connective tissue
18
ureter
12
bone element
12
epithelium
12
skeleton
10
spleen
1
pericardium
1
pituitary gland
Project
812
AMP
2
T1D
Genome assembly (visualization)
862
GRCh38
814
hg19
Lab
771
AMP-T2D consortium
20
Karen Mohlke, UNC
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Katalin Susztak, Upenn
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
27
inconsistent control
4
inconsistent ontology term
1
audit script error
Audit category:
25
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
month_released!
November, 2017
November, 2018
BIOSAMPLE
ASSAY
814 results
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Clear Filters
ChIP-seq
DNase-seq
ATAC-seq
Hi-C
RRBS
FAIRE-seq
snATAC-seq
tissue
liver
79
20
1
1
islet of Langerhans
31
1
42
2
1
1
heart left ventricle
29
3
2
1
1
kidney
20
13
1
1
1
body of pancreas
26
4
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