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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
120
ChIP-seq
21
DNase-seq
2
Hi-C
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
120
DNA binding
23
DNA accessibility
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
116
histone
116
histone modification
91
narrow histone mark
25
broad histone mark
2
RNA binding protein
2
control
2
transcription factor
Date released
77
October, 2019
25
May, 2019
19
June, 2019
12
November, 2017
6
October, 2017
5
July, 2019
2
November, 2018
1
February, 2023
Available data
142
bigWig
139
bam
138
bed narrowPeak
62
bigBed narrowPeak
43
tagAlign
34
bed broadPeak
25
bigBed broadPeak
23
bed bed3+
14
fastq
2
bed bedMethyl
2
bigBed bedMethyl
2
hdf5
1
bed bed3
1
tagAlign bed3+
Organism
147
Homo sapiens
Biosample type
134
tissue
13
primary cell
Organ
463
liver
252
pancreas
165
epithelium
152
brain
118
heart
117
kidney
114
connective tissue
107
vasculature
blood vessel
92
limb
67
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
27
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
147
AMP
Genome assembly (visualization)
202
GRCh38
147
hg19
Lab
147
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
3
missing controlled_by
assay_slims!
Transcription
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
147 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
11
14
1
1
angular gyrus
14
temporal lobe
13
superior frontal gyrus
4
frontal cortex
2
1
+ See 64 more…
primary cell
astrocyte of the cerebellum
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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