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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
16
pCHi-C
11
ATAC-seq
10
snATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
88
DNA binding
21
DNA accessibility
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
101
May, 2021
18
February, 2023
8
January, 2021
3
March, 2020
Available data
88
bam
88
bed narrowPeak
88
bigWig
84
tagAlign
Organism
130
Homo sapiens
Biosample type
99
primary cell
24
tissue
7
cell line
Organ
25
pancreas
blood
8
bodily fluid
2
epithelium
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
2554
AMP
130
T1D
117
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
88
GRCh38
88
hg19
Lab
126
Kyle Gaulton, UCSD
4
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
assay_slims!
Transcription
audit.ERROR.category!
audit script error
organ_slims!
blood
bone element
BIOSAMPLE
ASSAY
130 results
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ChIP-seq
pCHi-C
ATAC-seq
snATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
CD4-positive, alpha-beta T cell
2
B cell
1
CD8-positive, alpha-beta T cell
1
activated CD4-positive, alpha-beta T cell
1
+ See 9 more…
tissue
islet of Langerhans
2
11
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
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