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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
ATAC-seq
158
ChIP-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
10
RRBS
6
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
248
DNA accessibility
158
DNA binding
57
DNA methylation
6
3D chromatin structure
Target of assay
119
histone
119
histone modification
63
narrow histone mark
56
broad histone mark
29
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
46
September, 2018
31
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
8
February, 2021
8
January, 2021
7
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
260
bam
242
bigWig
168
bed narrowPeak
134
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
tar
Organism
470
Homo sapiens
Biosample type
1544
tissue
530
cell line
470
primary cell
208
in vitro differentiated cells
8
stem cell
Organ
239
epithelium
188
pancreas
34
vasculature
30
kidney
28
blood vessel
23
connective tissue
21
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
Project
344
AMP
117
HPAP
8
T1D
1
ITG
Genome assembly (visualization)
240
hg19
187
GRCh38
Lab
344
AMP-T2D consortium
117
Klaus Kaestner, Upenn
8
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
audit.ERROR.category!
audit script error
month_released!
May, 2021
organ_slims!
stomach
BIOSAMPLE
ASSAY
470 results
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ATAC-seq
ChIP-seq
WGBS
DNase-seq
snATAC-seq
RRBS
Hi-C
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
35
13
31
pancreatic beta cell
23
13
16
pancreatic endocrine cell
23
CD4-positive, alpha-beta memory T cell
22
naive thymus-derived CD4-positive, alpha-beta T cell
22
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