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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
250
ChIP-seq
198
ATAC-seq
47
WGBS
29
snATAC-seq
23
DNase-seq
15
pCHi-C
9
RRBS
4
Hi-C
1
DNAme array
Assay category
Transcription
250
DNA accessibility
250
DNA binding
57
DNA methylation
4
3D chromatin structure
Target of assay
214
histone
214
histone modification
109
broad histone mark
105
narrow histone mark
27
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
150
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
38
June, 2019
12
February, 2023
11
July, 2019
11
October, 2019
9
November, 2017
8
January, 2021
7
August, 2020
6
February, 2021
5
May, 2019
5
September, 2017
4
August, 2021
3
September, 2020
1
March, 2023
Available data
327
bigWig
316
bam
265
bed narrowPeak
134
fastq
101
zippedFastqFolder
100
tagAlign
81
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
25
bed bed3+
18
tsv
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
1
hic
Organism
576
Homo sapiens
Biosample type
1456
tissue
576
primary cell
547
cell line
168
in vitro differentiated cells
7
stem cell
Organ
239
epithelium
188
pancreas
34
vasculature
30
kidney
28
blood vessel
connective tissue
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
351
AMP
117
HPAP
107
T1D
1
ITG
Genome assembly (visualization)
335
hg19
255
GRCh38
Lab
318
AMP-T2D consortium
140
Kyle Gaulton, UCSD
117
Klaus Kaestner, Upenn
1
ITG
Audit category:
audit script error
30
inconsistent ontology term
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
audit.ERROR.category!
audit script error
organ_slims!
connective tissue
vein
BIOSAMPLE
ASSAY
576 results
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ChIP-seq
ATAC-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
pancreatic beta cell
13
23
16
CD8-positive, alpha-beta T cell
33
2
1
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
1
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