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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
8
snATAC-seq
2
ATAC-seq
Assay category
61
DNA binding
10
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
2
histone
2
histone modification
2
narrow histone mark
Date released
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
2
October, 2019
1
January, 2018
Available data
61
bam
60
fastq
56
bigWig
55
bed narrowPeak
54
bigBed narrowPeak
1
tagAlign
Organism
71
Homo sapiens
Biosample type
61
cell line
8
primary cell
2
tissue
Organ
598
liver
463
pancreas
318
epithelium
262
brain
227
heart
203
connective tissue
168
vasculature
162
blood vessel
145
kidney
115
limb
97
bone element
90
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
21
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
63
AMP
8
T1D
Genome assembly (visualization)
56
hg19
55
GRCh38
Lab
63
AMP-T2D consortium
8
Kyle Gaulton, UCSD
Audit category:
1
inconsistent control
assay_slims!
Transcription
audit.ERROR.category!
audit script error
lab.title!
Katalin Susztak, Upenn
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
snATAC-seq
ATAC-seq
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
tissue
islet of Langerhans
1
pituitary gland
1
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