Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
99
ChIP-seq
44
ATAC-seq
9
DNase-seq
2
Hi-C
1
FAIRE-seq
1
pCHi-C
Assay category
99
DNA binding
Transcription
54
DNA accessibility
2
3D chromatin structure
Target of assay
70
histone
70
histone modification
45
broad histone mark
25
narrow histone mark
21
control
8
transcription factor
4
RNA binding protein
Date released
50
May, 2019
46
October, 2019
35
February, 2023
14
February, 2021
July, 2019
5
June, 2019
3
March, 2020
3
November, 2017
Available data
127
bed narrowPeak
118
bam
87
bigWig
79
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
9
bed bed3+
6
tagAlign
3
fastq
2
bedpe bed3+
2
hic
1
tar
1
tsv
Organism
156
Homo sapiens
Biosample type
116
tissue
26
primary cell
14
cell line
Organ
595
liver
461
pancreas
310
epithelium
255
brain
201
connective tissue
199
kidney
161
vasculature
156
blood vessel
156
heart
110
limb
97
bone element
90
adipose tissue
82
artery
80
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
21
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
156
AMP
Genome assembly (visualization)
126
GRCh38
96
hg19
Lab
156
AMP-T2D consortium
Audit category:
audit script error
assay_slims!
Transcription
audit.ERROR.category!
audit script error
month_released!
April, 2019
July, 2019
BIOSAMPLE
ASSAY
156 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
pCHi-C
tissue
coronary artery
5
35
2
tibial artery
23
1
2
ascending aorta
16
1
thoracic aorta
16
aorta
13
1
1
primary cell
endothelial cell of umbilical vein
17
2
1
1
brain microvascular endothelial cell
3
1
kidney capillary endothelial cell
1
cell line
smooth muscle cell of the coronary artery
6
8
Download