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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
54
DNase-seq
8
ATAC-seq
4
Hi-C
1
WGBS
1
pCHi-C
Assay category
66
DNA binding
62
DNA accessibility
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
65
October, 2019
50
June, 2019
7
May, 2019
6
February, 2021
5
July, 2019
1
March, 2020
Available data
128
bam
110
bed narrowPeak
105
bigWig
102
bigBed narrowPeak
54
bed bed3+
54
bed broadPeak
54
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tsv
Organism
134
Homo sapiens
Biosample type
134
tissue
Organ
598
liver
463
pancreas
318
epithelium
262
brain
227
heart
227
kidney
203
connective tissue
168
vasculature
162
blood vessel
115
limb
97
bone element
90
adipose tissue
86
musculature of body
83
artery
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
23
embryo
21
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
134
AMP
Genome assembly (visualization)
110
GRCh38
110
hg19
Lab
134
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
assay_slims!
Transcription
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
134 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
WGBS
pCHi-C
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
1
muscle of arm
17
renal pelvis
10
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