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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
220
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
19
DNase-seq
17
pCHi-C
10
Hi-C
7
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
276
DNA accessibility
220
DNA binding
55
DNA methylation
10
3D chromatin structure
Target of assay
183
histone
183
histone modification
96
broad histone mark
87
narrow histone mark
29
control
8
RNA binding protein
8
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
47
August, 2017
42
June, 2019
35
February, 2021
23
October, 2019
14
September, 2018
12
February, 2023
10
July, 2019
9
November, 2017
8
January, 2021
7
August, 2020
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
293
bigWig
288
bam
241
bed narrowPeak
117
fastq
101
zippedFastqFolder
100
tagAlign
93
bigBed narrowPeak
39
bed broadPeak
39
bigBed broadPeak
25
bed bed3+
18
tsv
7
bed bedMethyl
7
bigBed bedMethyl
6
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
578
Homo sapiens
Biosample type
1313
tissue
578
primary cell
518
cell line
250
in vitro differentiated cells
8
stem cell
Organ
222
epithelium
147
pancreas
35
vasculature
kidney
29
blood vessel
24
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
322
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
311
hg19
218
GRCh38
Lab
289
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
audit.ERROR.category!
inconsistent control
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
kidney
BIOSAMPLE
ASSAY
578 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
pCHi-C
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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