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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
255
ChIP-seq
200
ATAC-seq
56
snATAC-seq
47
WGBS
17
pCHi-C
14
DNase-seq
7
Hi-C
6
RRBS
1
DNAme array
1
FAIRE-seq
Assay category
Transcription
271
DNA accessibility
255
DNA binding
54
DNA methylation
7
3D chromatin structure
Target of assay
224
histone
224
histone modification
117
broad histone mark
107
narrow histone mark
26
control
5
RNA binding protein
5
transcription factor
1
chromatin remodeller
Date released
151
May, 2021
101
May, 2022
100
May, 2020
59
August, 2017
46
September, 2018
37
June, 2019
35
February, 2021
23
October, 2019
12
February, 2023
8
January, 2021
7
August, 2020
6
July, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
1
March, 2023
Available data
320
bigWig
318
bam
262
bed narrowPeak
152
fastq
101
zippedFastqFolder
100
tagAlign
82
bigBed narrowPeak
28
bed broadPeak
28
bigBed broadPeak
18
tsv
17
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
4
bedpe bed3+
3
cool
1
bed bed3
1
hdf5
1
tar
Organism
604
Homo sapiens
Biosample type
1095
tissue
604
primary cell
531
cell line
256
in vitro differentiated cells
8
stem cell
Organ
243
epithelium
191
pancreas
35
vasculature
kidney
29
blood vessel
24
connective tissue
22
vein
brain
12
musculature of body
9
heart
9
liver
8
blood
8
bodily fluid
5
eye
1
bone element
1
bone marrow
Project
348
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
337
hg19
251
GRCh38
Lab
315
AMP-T2D consortium
147
Klaus Kaestner, Upenn
141
Kyle Gaulton, UCSD
1
ITG
Audit category:
35
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
audit.ERROR.category!
inconsistent control
organ_slims!
brain
kidney
BIOSAMPLE
ASSAY
604 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
pCHi-C
DNase-seq
Hi-C
RRBS
DNAme array
FAIRE-seq
primary cell
monocyte
85
15
1
1
pancreatic alpha cell
13
35
31
1
pancreatic beta cell
13
23
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
1
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