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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
38
ChIP-seq
10
ATAC-seq
4
DNase-seq
1
pCHi-C
Assay category
Transcription
38
DNA binding
14
DNA accessibility
Target of assay
24
histone
24
histone modification
14
broad histone mark
10
narrow histone mark
9
control
5
transcription factor
1
RNA binding protein
Date released
February, 2023
30
October, 2019
14
February, 2021
5
May, 2019
2
June, 2019
1
July, 2019
1
March, 2020
Available data
48
bam
39
bed narrowPeak
31
bigWig
25
bigBed narrowPeak
6
tagAlign
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
tsv
Organism
53
Homo sapiens
Biosample type
39
tissue
14
cell line
Organ
597
liver
410
pancreas
259
brain
254
epithelium
209
kidney
186
heart
178
connective tissue
133
vasculature
128
blood vessel
114
limb
88
adipose tissue
78
musculature of body
69
blood
69
bodily fluid
48
artery
38
nerve
25
spleen
22
vein
19
embryo
18
ureter
15
eye
11
lung
9
bone element
8
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
Project
53
AMP
Genome assembly (visualization)
39
GRCh38
39
hg19
Lab
53
AMP-T2D consortium
assay_slims!
Transcription
audit.ERROR.category!
inconsistent ontology term
month_released!
February, 2023
BIOSAMPLE
ASSAY
53 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
tissue
tibial artery
23
1
2
coronary artery
5
1
2
islet of Langerhans
4
ovary
1
cell line
smooth muscle cell of the coronary artery
6
8
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