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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
213
ChIP-seq
18
ATAC-seq
8
DNase-seq
4
pCHi-C
2
Hi-C
Assay category
213
DNA binding
26
DNA accessibility
Transcription
2
3D chromatin structure
Target of assay
179
histone
179
histone modification
133
narrow histone mark
46
broad histone mark
34
control
Date released
406
November, 2017
322
August, 2017
245
October, 2019
196
May, 2021
192
June, 2019
147
May, 2020
140
May, 2022
136
August, 2021
117
May, 2019
102
February, 2023
90
December, 2017
87
November, 2018
80
April, 2019
74
October, 2018
68
February, 2021
46
September, 2018
41
July, 2019
40
May, 2024
35
December, 2018
35
March, 2020
25
January, 2019
24
February, 2018
23
October, 2017
20
November, 2019
16
January, 2021
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
6
November, 2020
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
198
bam
167
bigWig
163
bed narrowPeak
57
bigBed narrowPeak
49
tagAlign
6
bed bed3+
5
bed broadPeak
5
bigBed broadPeak
1
bedpe bed3+
1
hdf5
1
hic
1
tagAlign bed3+
Organism
245
Homo sapiens
Biosample type
218
tissue
16
cell line
9
primary cell
2
in vitro differentiated cells
Organ
83
brain
65
limb
47
blood vessel
47
vasculature
38
nerve
31
epithelium
26
artery
vein
18
pancreas
14
kidney
7
eye
6
heart
5
liver
4
connective tissue
4
gonad
4
ovary
2
pituitary gland
1
adipose tissue
1
lymph node
1
skin of body
Project
245
AMP
Genome assembly (visualization)
170
hg19
166
GRCh38
Lab
245
AMP-T2D consortium
Audit category:
inconsistent ontology term
Audit category:
1
inconsistent assembly
assay_slims!
Transcription
audit.ERROR.category!
inconsistent ontology term
month_released!
March, 2019
organ_slims!
vein
BIOSAMPLE
ASSAY
245 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
Hi-C
tissue
islet of Langerhans
21
13
4
tibial nerve
35
1
2
tibial artery
23
1
2
heart
5
1
brain
5
+ See 76 more…
cell line
Panc1
13
1
1
glomerular visceral epithelial cell
1
primary cell
epithelial cell of proximal tubule
7
kidney glomerular epithelial cell
1
kidney tubule cell
1
in vitro differentiated cells
adipocyte
2
See all biosamples
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