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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
4
ATAC-seq
4
ChIP-seq
2
pCHi-C
Assay category
Transcription
4
DNA accessibility
4
DNA binding
Target of assay
4
histone
4
histone modification
4
narrow histone mark
Date released
84
February, 2021
4
February, 2023
4
October, 2019
1
March, 2020
1
May, 2021
Available data
84
txt
8
bam
bed narrowPeak
4
bed bed3
1
tsv
Organism
94
Homo sapiens
Biosample type
93
tissue
1
primary cell
Organ
253
pancreas
172
epithelium
157
liver
128
connective tissue
89
bone element
77
adipose tissue
59
brain
46
kidney
36
heart
36
vasculature
34
blood vessel
27
musculature of body
23
limb
15
blood
15
bodily fluid
11
lung
11
nerve
11
spleen
9
artery
9
embryo
9
eye
9
vein
5
gonad
5
ovary
4
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
93
AMP
1
T1D
Genome assembly (visualization)
4
hg19
Lab
93
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
assay_slims!
Transcription
audit.ERROR.category!
inconsistent replicate
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
94 results
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RNA microarray
ATAC-seq
ChIP-seq
pCHi-C
tissue
bone element
84
islet of Langerhans
4
acetabular part of hip bone
1
ilium
1
ischium
1
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primary cell
megakaryocyte
1
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