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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ChIP-seq
9
DNase-seq
7
WGBS
1
FAIRE-seq
Assay category
49
DNA binding
10
DNA accessibility
7
DNA methylation
Transcription
Target of assay
64
transcription factor
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
369
November, 2017
314
August, 2017
284
October, 2019
214
June, 2019
212
May, 2021
151
February, 2021
151
May, 2020
140
May, 2022
138
August, 2021
115
May, 2019
111
February, 2023
90
December, 2017
76
April, 2019
66
November, 2018
63
October, 2018
48
March, 2020
46
September, 2018
43
July, 2019
40
November, 2019
35
May, 2024
33
December, 2018
24
February, 2018
23
October, 2017
19
January, 2019
16
January, 2021
12
November, 2020
11
May, 2023
11
September, 2017
10
April, 2020
8
January, 2018
7
August, 2020
5
March, 2019
4
October, 2022
3
September, 2020
2
December, 2019
1
August, 2018
1
August, 2022
1
March, 2023
Available data
66
bam
66
fastq
59
bigWig
52
bed narrowPeak
52
bigBed narrowPeak
9
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
Organism
66
Homo sapiens
Biosample type
40
cell line
26
tissue
Organ
34
liver
13
blood
13
bodily fluid
9
spleen
7
pancreas
2
brain
1
adipose tissue
1
connective tissue
Project
66
AMP
Genome assembly (visualization)
58
GRCh38
50
hg19
Lab
66
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
4
inconsistent control read length
3
inconsistent control run_type
assay_slims!
Transcription
audit.ERROR.category!
inconsistent replicate
organ_slims!
small intestine
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
66 results
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ChIP-seq
DNase-seq
WGBS
FAIRE-seq
cell line
HepG2
26
1
GM12878
13
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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