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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
16
ATAC-seq
4
DNase-seq
1
pCHi-C
Assay category
Transcription
21
DNA binding
20
DNA accessibility
Target of assay
17
histone
17
histone modification
9
narrow histone mark
8
broad histone mark
transcription factor
4
control
2
RNA binding protein
Date released
84
February, 2021
24
June, 2019
20
November, 2019
18
May, 2021
13
March, 2020
11
October, 2019
9
February, 2023
6
November, 2020
4
December, 2017
4
May, 2020
3
August, 2021
2
July, 2019
2
May, 2019
Available data
25
bam
21
bed narrowPeak
21
bigWig
20
bigBed narrowPeak
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
Organism
42
Homo sapiens
Biosample type
24
primary cell
17
cell line
1
tissue
Organ
20
epithelium
17
pancreas
11
connective tissue
9
musculature of body
4
heart
3
kidney
1
limb
1
vasculature
Project
40
AMP
2
T1D
Genome assembly (visualization)
21
GRCh38
21
hg19
Lab
41
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
assay_slims!
Transcription
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
42 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
primary cell
skeletal muscle satellite cell
8
mesenchymal stem cell
7
cardiac fibroblast
3
1
epithelial cell of proximal tubule
2
1
naive B cel
1
+ See 1 more…
cell line
EndoC_BH1
1
16
tissue
muscle of leg
1
See all biosamples
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