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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
54
ATAC-seq
19
DNase-seq
6
MeRIP-seq
6
RRBS
5
Hi-C
2
Capture-C
1
CRISPR genome editing followed by sgRNA sequencing
1
FAIRE-seq
1
RNA microarray
Assay category
Transcription
84
DNA binding
74
DNA accessibility
6
DNA methylation
5
3D chromatin structure
Target of assay
55
histone
55
histone modification
28
narrow histone mark
27
broad histone mark
26
control
6
RNA binding protein
6
transcription factor
3
nucleotide modification
Date released
32
October, 2019
29
August, 2017
20
June, 2019
16
May, 2021
15
November, 2019
14
September, 2018
13
February, 2023
8
July, 2019
6
August, 2021
6
November, 2017
6
November, 2020
5
May, 2019
5
September, 2017
3
March, 2020
1
December, 2019
Available data
126
bam
110
bed narrowPeak
104
bigWig
62
bigBed narrowPeak
54
fastq
22
bed broadPeak
22
bigBed broadPeak
21
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
4
tagAlign
3
hic
2
bedpe bed3+
2
hdf5
2
tsv
1
tar
Organism
178
Homo sapiens
Biosample type
123
primary cell
43
cell line
in vitro differentiated cells
13
tissue
Organ
570
liver
286
pancreas
258
brain
229
kidney
227
heart
179
epithelium
169
vasculature
163
blood vessel
115
limb
102
connective tissue
96
bone element
87
musculature of body
83
artery
77
adipose tissue
61
blood
61
bodily fluid
42
eye
38
nerve
25
spleen
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
179
AMP
99
HPAP
2
T1D
Genome assembly (visualization)
121
hg19
97
GRCh38
Lab
173
AMP-T2D consortium
6
Rohit N. Kulkarni, M.D., Ph.D.
Audit category:
50
inconsistent ontology term
2
audit script error
Audit category:
missing controlled_by
Audit category:
4
inconsistent control read length
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
179 results
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ChIP-seq
ATAC-seq
DNase-seq
MeRIP-seq
RRBS
Hi-C
Capture-C
CRISPR genome editing followed by sgRNA sequencing
FAIRE-seq
RNA microarray
primary cell
endothelial cell of umbilical vein
17
2
2
1
pancreatic beta cell
13
7
pancreatic alpha cell
13
6
epithelial cell of proximal tubule
10
1
1
kidney epithelial cell
5
1
1
+ See 14 more…
cell line
EndoC_BH1
13
19
6
1
2
1
glomerular visceral epithelial cell
1
tissue
pigmented layer of retina
12
renal glomerulus
1
See all biosamples
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