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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
831
ChIP-seq
231
ATAC-seq
178
DNase-seq
87
RNA microarray
27
WGBS
24
pCHi-C
18
snATAC-seq
16
Hi-C
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
Transcription
831
DNA binding
431
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
593
histone modification
592
histone
299
broad histone mark
293
narrow histone mark
164
control
76
transcription factor
27
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
220
October, 2019
173
August, 2017
163
June, 2019
115
May, 2019
95
February, 2021
82
November, 2017
80
April, 2019
74
October, 2018
73
August, 2021
68
February, 2023
May, 2020
48
December, 2017
40
May, 2024
31
March, 2020
30
July, 2019
26
November, 2018
21
May, 2022
21
November, 2019
19
October, 2017
11
May, 2023
10
April, 2020
7
December, 2018
7
January, 2019
6
September, 2017
5
March, 2019
4
November, 2020
2
December, 2019
2
January, 2018
1
August, 2022
Available data
935
bed narrowPeak
891
bam
803
bigWig
558
bigBed narrowPeak
230
fastq
211
bed broadPeak
191
bed bed3+
184
tagAlign
176
bigBed broadPeak
85
txt
64
xls
26
tsv
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
tagAlign bed3+
Organism
1425
Homo sapiens
Biosample type
1434
tissue
528
cell line
367
primary cell
208
in vitro differentiated cells
8
stem cell
Organ
240
brain
204
heart
184
kidney
165
pancreas
137
liver
120
blood vessel
120
vasculature
115
limb
96
bone element
78
connective tissue
77
adipose tissue
75
musculature of body
69
artery
38
nerve
37
eye
25
spleen
18
ureter
13
epithelium
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
1
adrenal gland
1
esophagus
1
large intestine
1
lymph node
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
thymus
1
urinary bladder
Project
1422
AMP
10
LungMap
2
T1D
Genome assembly (visualization)
897
GRCh38
767
hg19
Lab
1271
AMP-T2D consortium
82
Katalin Susztak, Upenn
Kyle Gaulton, UCSD
40
Patrick T. Ellinor, Broad
20
Karen Mohlke, UNC
10
Xin Sun, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
3
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
90
inconsistent ontology term
27
inconsistent control
4
audit script error
Audit category:
missing controlled_by
Audit category:
6
inconsistent control read length
1
inconsistent assembly
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
lab.title!
Kyle Gaulton, UCSD
month_released!
May, 2020
BIOSAMPLE
ASSAY
1434 results
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Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
RNA microarray
WGBS
pCHi-C
snATAC-seq
Hi-C
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
kidney
27
75
13
6
1
1
1
liver
95
20
2
3
1
1
1
islet of Langerhans
61
39
1
4
1
3
1
1
4
bone element
84
heart left ventricle
35
2
3
4
1
1
1
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