Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
114
ChIP-seq
32
DNase-seq
3
Hi-C
Assay category
114
DNA binding
32
DNA accessibility
3
3D chromatin structure
Target of assay
95
histone
95
histone modification
53
narrow histone mark
42
broad histone mark
19
control
Date released
66
November, 2017
38
October, 2019
30
June, 2019
10
October, 2017
3
July, 2019
2
November, 2018
Available data
228
bam
207
bigWig
200
bed narrowPeak
124
bigBed narrowPeak
114
tagAlign
45
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
17
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
2
tsv
1
bed bed3
1
tagAlign bed3+
Organism
149
Homo sapiens
Biosample type
141
tissue
8
primary cell
Organ
149
brain
96
liver
78
kidney
49
musculature of body
45
connective tissue
38
pancreas
36
heart
36
limb
25
epithelium
19
vasculature
18
ureter
17
blood vessel
10
adipose tissue
10
artery
4
eye
3
embryo
2
nerve
2
vein
1
pituitary gland
1
spleen
Project
149
AMP
Genome assembly (visualization)
111
GRCh38
65
hg19
Lab
149
AMP-T2D consortium
Audit category:
missing controlled_by
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
BIOSAMPLE
ASSAY
149 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
DNase-seq
Hi-C
tissue
brain
10
14
caudate nucleus
15
1
substantia nigra
16
layer of hippocampus
15
cingulate gyrus
14
+ See 37 more…
primary cell
astrocyte of the cerebellum
1
1
brain microvascular endothelial cell
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
choroid plexus epithelial cell
1
See all biosamples
Download