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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
27
ChIP-seq
1
ATAC-seq
1
WGBS
Assay category
34
DNA accessibility
27
DNA binding
Transcription
1
DNA methylation
Target of assay
27
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
41
June, 2019
13
August, 2017
6
May, 2019
1
January, 2018
1
July, 2019
Available data
62
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
62
Homo sapiens
Biosample type
53
tissue
9
primary cell
Organ
448
liver
207
brain
163
pancreas
154
heart
134
epithelium
119
kidney
97
vasculature
92
blood vessel
87
limb
79
connective tissue
62
musculature of body
55
blood
55
bodily fluid
31
artery
27
nerve
18
ureter
16
spleen
15
adipose tissue
15
embryo
15
vein
6
eye
1
pituitary gland
Project
62
AMP
Genome assembly (visualization)
61
hg19
47
GRCh38
Lab
62
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
lung
BIOSAMPLE
ASSAY
62 results
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DNase-seq
ChIP-seq
ATAC-seq
WGBS
tissue
muscle of leg
13
6
1
muscle of arm
17
skeletal muscle tissue
13
1
forelimb muscle
1
hindlimb muscle
1
primary cell
skeletal muscle satellite cell
7
skeletal muscle cell
1
1
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