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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
61
ChIP-seq
6
ATAC-seq
6
WGBS
2
pCHi-C
1
DNase-seq
1
RNA microarray
Assay category
Transcription
61
DNA binding
7
DNA accessibility
6
DNA methylation
Target of assay
32
histone
32
histone modification
24
control
20
broad histone mark
12
narrow histone mark
5
RNA binding protein
5
transcription factor
Date released
45
August, 2017
23
October, 2018
1
August, 2018
1
August, 2021
1
February, 2023
1
January, 2018
June, 2019
1
March, 2020
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
32
fastq
31
bam
14
bigWig
12
bed narrowPeak
9
bigBed narrowPeak
8
tagAlign
2
bed bedMethyl
2
bed broadPeak
2
bigBed bedMethyl
1
bed bed3+
1
bedpe bed3+
1
bigBed broadPeak
1
tsv
Organism
76
Homo sapiens
Biosample type
76
tissue
1
in vitro differentiated cells
Organ
583
liver
409
pancreas
282
epithelium
228
brain
192
heart
168
connective tissue
162
vasculature
158
blood vessel
148
kidney
97
bone element
83
limb
81
artery
77
adipose tissue
69
blood
69
bodily fluid
44
musculature of body
38
nerve
35
eye
25
spleen
22
embryo
22
vein
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
77
AMP
Genome assembly (visualization)
14
hg19
12
GRCh38
Lab
77
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
missing controlled_by
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
month_released!
June, 2019
BIOSAMPLE
ASSAY
77 results
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ChIP-seq
ATAC-seq
WGBS
pCHi-C
DNase-seq
RNA microarray
tissue
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
12
1
1
omental fat pad
11
1
1
adipose tissue
2
3
3
1
adipose tissue(adipose white tissue)
1
in vitro differentiated cells
white fat cell
1
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