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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
1
GRO-seq
1
pCHi-C
Assay category
21
DNA binding
Transcription
Target of assay
11
histone
11
histone modification
7
control
7
narrow histone mark
4
broad histone mark
3
transcription factor
Date released
12
December, 2017
9
February, 2018
1
January, 2018
1
March, 2020
Available data
22
fastq
21
bam
15
bigWig
14
bed narrowPeak
3
bed bed3+
1
tsv
Organism
23
Homo sapiens
Biosample type
22
in vitro differentiated cells
1
tissue
Organ
585
liver
413
pancreas
302
epithelium
258
brain
229
kidney
227
heart
186
connective tissue
169
vasculature
163
blood vessel
115
limb
97
bone element
87
musculature of body
83
artery
78
adipose tissue
69
blood
69
bodily fluid
42
eye
38
nerve
25
spleen
22
embryo
vein
18
ureter
12
skeleton
11
lung
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
23
AMP
Genome assembly (visualization)
15
GRCh38
15
hg19
1
hg18
Lab
23
AMP-T2D consortium
Audit category:
4
inconsistent ontology term
Audit category:
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
audit.NOT_COMPLIANT.category!
missing controlled_by
organ_slims!
vein
BIOSAMPLE
ASSAY
23 results
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ChIP-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
17
1
Hepatic endoderm
4
tissue
esophagus
1
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