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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
ChIP-seq
56
snATAC-seq
49
ATAC-seq
47
WGBS
16
pCHi-C
3
Hi-C
Assay category
Transcription
105
DNA accessibility
84
DNA binding
47
DNA methylation
3
3D chromatin structure
Target of assay
84
histone
84
histone modification
44
broad histone mark
40
narrow histone mark
Date released
101
May, 2022
100
May, 2021
33
February, 2021
8
January, 2021
7
August, 2020
3
October, 2022
3
September, 2020
Available data
101
zippedFastqFolder
94
bigWig
84
bam
84
bed narrowPeak
84
tagAlign
43
fastq
6
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
255
Homo sapiens
Biosample type
255
primary cell
24
tissue
7
cell line
Organ
99
epithelium
99
pancreas
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
Project
391
AMP
147
HPAP
108
T1D
1
ITG
Genome assembly (visualization)
94
GRCh38
87
hg19
Lab
147
Klaus Kaestner, Upenn
108
Kyle Gaulton, UCSD
Audit category:
30
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
255 results
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ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
primary cell
monocyte
84
1
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
peripheral blood mononuclear cell
8
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