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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
21
ChIP-seq
Assay category
21
DNA binding
Target of assay
24
histone
histone modification
21
transcription factor
14
narrow histone mark
13
chromatin remodeller
10
broad histone mark
6
RNA binding protein
1
recombinant protein
Date released
10
November, 2017
6
August, 2017
5
November, 2018
December, 2017
Available data
21
bam
21
bed narrowPeak
21
bigWig
21
fastq
15
bigBed narrowPeak
4
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
Organism
21
Homo sapiens
Biosample type
15
cell line
6
in vitro differentiated cells
Organ
15
liver
6
connective tissue
Project
21
AMP
Genome assembly (visualization)
21
hg19
19
GRCh38
Lab
21
AMP-T2D consortium
Audit category:
5
missing controlled_by
Audit category:
21
inconsistent control read length
8
inconsistent control run_type
1
inconsistent assembly
assay_slims!
Transcription
lab.title!
Katalin Susztak, Upenn
month_released!
December, 2017
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
21 results
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ChIP-seq
cell line
HepG2
15
in vitro differentiated cells
adipocyte
6
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