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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
49
ATAC-seq
48
snATAC-seq
47
WGBS
4
Hi-C
2
ChIP-seq
Assay category
Transcription
97
DNA accessibility
47
DNA methylation
4
3D chromatin structure
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
101
May, 2022
33
February, 2021
7
August, 2020
3
October, 2022
3
September, 2020
1
March, 2020
1
March, 2023
1
May, 2021
Available data
101
zippedFastqFolder
43
fastq
12
bigWig
6
tsv
4
hic
3
bedpe bed3+
3
cool
2
bam
2
bed narrowPeak
Organism
150
Homo sapiens
Biosample type
148
primary cell
tissue
2
cell line
Organ
101
epithelium
101
pancreas
Project
AMP
147
HPAP
2
T1D
1
ITG
Genome assembly (visualization)
13
GRCh38
5
hg19
Lab
147
Klaus Kaestner, Upenn
Kyle Gaulton, UCSD
2
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
2
inconsistent ontology term
assay_slims!
Transcription
award.project!
AMP
biosample_type!
tissue
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
150 results
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ATAC-seq
snATAC-seq
WGBS
Hi-C
ChIP-seq
primary cell
pancreatic alpha cell
29
31
1
Langerhans cell
48
pancreatic beta cell
16
16
1
pancreatic acinar cell
4
1
chondrocytes
1
cell line
EndoC_BH1
2
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