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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
55
snATAC-seq
21
ATAC-seq
17
pCHi-C
6
WGBS
4
Hi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
Assay category
Transcription
88
DNA binding
76
DNA accessibility
6
DNA methylation
4
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
102
May, 2021
33
February, 2021
18
February, 2023
16
January, 2021
10
April, 2020
7
August, 2020
3
March, 2020
3
October, 2022
3
September, 2020
1
March, 2023
Available data
zippedFastqFolder
98
bigWig
88
bam
88
bed narrowPeak
84
tagAlign
43
fastq
6
tsv
4
hic
3
bedpe bed3+
3
cool
Organism
195
Homo sapiens
Biosample type
155
primary cell
34
tissue
7
cell line
Organ
44
pancreas
21
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
139
T1D
46
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
99
GRCh38
91
hg19
Lab
135
Kyle Gaulton, UCSD
46
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
4
AMP-T2D consortium
1
ITG
Audit category:
30
audit script error
3
inconsistent ontology term
assay_slims!
Transcription
award.project!
AMP
files.file_type!
hdf5
zippedFastqFolder
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
snATAC-seq
ATAC-seq
pCHi-C
WGBS
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte
84
1
Langerhans cell
27
pancreatic alpha cell
7
6
1
peripheral blood mononuclear cell
8
pancreatic beta cell
3
1
+ See 16 more…
tissue
islet of Langerhans
2
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
See all biosamples
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