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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
86
ChIP-seq
76
snATAC-seq
17
pCHi-C
11
ATAC-seq
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
Hi-C
Assay category
Transcription
87
DNA accessibility
86
DNA binding
1
3D chromatin structure
Target of assay
86
histone
86
histone modification
44
broad histone mark
42
narrow histone mark
Date released
101
May, 2021
27
February, 2021
21
May, 2022
18
February, 2023
16
January, 2021
10
April, 2020
2
March, 2020
1
March, 2023
Available data
86
bam
86
bed narrowPeak
86
bigWig
84
tagAlign
27
fastq
21
zippedFastqFolder
1
hic
Organism
195
Homo sapiens
Biosample type
157
primary cell
34
tissue
5
cell line
Organ
124
pancreas
epithelium
10
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
137
T1D
48
HPAP
10
LungMap
1
ITG
Genome assembly (visualization)
87
GRCh38
86
hg19
Lab
135
Kyle Gaulton, UCSD
48
Klaus Kaestner, Upenn
10
Xin Sun, UCSD
2
AMP-T2D consortium
1
ITG
Audit category:
27
audit script error
1
inconsistent ontology term
assay_slims!
Transcription
award.project!
AMP
organ_slims!
epithelium
nerve
BIOSAMPLE
ASSAY
196 results
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ChIP-seq
snATAC-seq
pCHi-C
ATAC-seq
CRISPR genome editing followed by DNA sequencing
HiChIP
Hi-C
primary cell
monocyte
84
1
Langerhans cell
48
peripheral blood mononuclear cell
8
CD4-positive, alpha-beta T cell
2
B cell
1
+ See 13 more…
tissue
islet of Langerhans
2
6
11
lung
10
pancreas
4
thymus
1
cell line
EndoC_BH1
3
2
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