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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 88ChIP-seq
  • 76snATAC-seq
  • 60ATAC-seq
  • 47WGBS
  • 17pCHi-C
  • 4Hi-C
  • 3CRISPR genome editing followed by DNA sequencing
  • 2HiChIP
Assay category
  • Transcription
  • 136DNA accessibility
  • 88DNA binding
  • 47DNA methylation
  • 43D chromatin structure
Target of assay
  • 88histone
  • 88histone modification
  • 44broad histone mark
  • 44narrow histone mark
Date released
  • 102May, 2021
  • 101May, 2022
  • 33February, 2021
  • 18February, 2023
  • 16January, 2021
  • 10April, 2020
  • 7August, 2020
  • 3March, 2020
  • 3October, 2022
  • 3September, 2020
  • 1March, 2023
Available data
  • 101zippedFastqFolder
  • 98bigWig
  • 88bam
  • 88bed narrowPeak
  • 84tagAlign
  • 43fastq
  • 6tsv
  • 4hic
  • 3bedpe bed3+
  • 3cool
Organism
  • 296Homo sapiens
Biosample type
  • 256primary cell
  • 34tissue
  • 7cell line
Organ
  • 124pancreas
  • 101epithelium
  • 10lung
  • 8blood
  • 8bodily fluid
  • 1bone element
  • 1bone marrow
  • 1connective tissue
  • 1thymus
Project
  • AMP
  • 147HPAP
  • 139T1D
  • 10LungMap
  • 1ITG
Genome assembly (visualization)
  • 99GRCh38
  • 91hg19
Lab
  • 147Klaus Kaestner, Upenn
  • 135Kyle Gaulton, UCSD
  • 10Xin Sun, UCSD
  • 4AMP-T2D consortium
  • 1ITG
Audit category:
  • 30audit script error
  • 3inconsistent ontology term
assay_slims!
  • Transcription
award.project!
  • AMP
BIOSAMPLE
ASSAY

297 results

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Clear Filters
ChIP-seq
snATAC-seq
ATAC-seq
WGBS
pCHi-C
Hi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
primary cell
monocyte841
pancreatic alpha cell29311
Langerhans cell48
pancreatic beta cell16161
peripheral blood mononuclear cell8
tissue
islet of Langerhans2611
lung10
pancreas4
thymus1
cell line
EndoC_BH1232
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