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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
143
ChIP-seq
38
ATAC-seq
5
pCHi-C
4
GRO-seq
2
Capture-C
2
Hi-C
1
DNase-seq
Assay category
143
DNA binding
Transcription
39
DNA accessibility
2
3D chromatin structure
Target of assay
112
histone
112
histone modification
56
broad histone mark
narrow histone mark
49
transcription factor
37
control
11
RNA binding protein
3
chromatin remodeller
Date released
52
August, 2017
37
May, 2021
30
December, 2017
28
August, 2021
16
February, 2018
12
February, 2023
6
March, 2020
October, 2019
5
November, 2019
4
February, 2021
4
January, 2018
1
August, 2018
Available data
121
bam
93
fastq
90
bed narrowPeak
90
bigWig
28
tagAlign
21
bed bed3+
10
bigBed narrowPeak
7
bed bedgraph
5
bed bed3
5
bedpe bed3+
3
txt
2
hic
2
ibed
2
tsv
1
bed broadPeak
1
bigBed broadPeak
Organism
195
Homo sapiens
Biosample type
1125
tissue
514
primary cell
505
cell line
195
in vitro differentiated cells
7
stem cell
Organ
70
connective tissue
15
embryo
14
epithelium
10
liver
2
pancreas
1
adipose tissue
Project
195
AMP
Genome assembly (visualization)
124
hg19
96
GRCh38
4
hg18
Lab
156
AMP-T2D consortium
32
Kyle Gaulton, UCSD
7
Struan F.A. Grant, CHOP
Audit category:
18
inconsistent ontology term
Audit category:
5
missing controlled_by
Audit category:
15
inconsistent control read length
assay_slims!
Transcription
award.project!
LungMap
month_released!
October, 2019
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
195 results
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ChIP-seq
ATAC-seq
pCHi-C
GRO-seq
Capture-C
Hi-C
DNase-seq
in vitro differentiated cells
adipocyte
51
6
1
1
embryonic stem cell
29
6
1
neural progenitor cell
14
10
pancreatic endoderm
12
1
hepatocyte
10
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