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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
26
ChIP-seq
6
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
26
DNA binding
Transcription
6
3D chromatin structure
6
DNA methylation
2
DNA accessibility
Target of assay
20
histone
20
histone modification
12
broad histone mark
8
narrow histone mark
6
control
Date released
13
August, 2017
10
June, 2019
7
May, 2019
6
July, 2019
3
March, 2020
1
January, 2018
1
May, 2022
Available data
62
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
tsv
1
txt
Organism
41
Homo sapiens
Biosample type
30
tissue
11
primary cell
Organ
535
liver
446
pancreas
301
epithelium
214
brain
197
heart
193
connective tissue
152
vasculature
151
kidney
150
blood vessel
97
bone element
87
adipose tissue
79
artery
79
limb
69
blood
69
bodily fluid
41
musculature of body
38
eye
36
nerve
24
spleen
23
embryo
18
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
41
AMP
Genome assembly (visualization)
21
hg19
14
GRCh38
Lab
41
AMP-T2D consortium
Audit category:
8
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
award.project!
LungMap
files.file_type!
bed broadPeak
tagAlign bed3+
BIOSAMPLE
ASSAY
41 results
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ChIP-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
muscle of leg
7
1
gastrocnemius medialis
4
psoas muscle
2
1
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
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