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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
117
ChIP-seq
5
WGBS
4
Hi-C
3
pCHi-C
2
RRBS
2
STARR-seq
1
DNase-seq
1
whole genome sequencing assay
Assay category
Transcription
117
DNA binding
7
DNA methylation
4
3D chromatin structure
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
64
November, 2017
24
May, 2020
16
August, 2017
13
December, 2017
9
August, 2021
3
July, 2019
2
March, 2020
2
November, 2018
1
December, 2018
1
February, 2021
Available data
440
bam
416
fastq
378
bigWig
bed narrowPeak
323
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
28
tagAlign
10
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
2
tsv
1
bed bed3
1
hdf5
1
vcf
Organism
135
Homo sapiens
Biosample type
77
cell line
54
tissue
3
primary cell
1
in vitro differentiated cells
Organ
229
pancreas
167
epithelium
135
liver
89
bone element
85
connective tissue
47
adipose tissue
46
kidney
39
brain
36
heart
31
vasculature
29
blood vessel
22
limb
21
musculature of body
15
blood
15
bodily fluid
11
nerve
11
spleen
9
artery
8
embryo
7
eye
4
skeleton
4
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
lung
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
135
AMP
Genome assembly (visualization)
24
hg19
2
GRCh38
Lab
127
AMP-T2D consortium
8
Bing Ren, UCSD
Audit category:
1
missing controlled_by
assay_slims!
Transcription
award.project!
LungMap
files.file_type!
bed narrowPeak
target.investigated_as!
histone
BIOSAMPLE
ASSAY
135 results
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ChIP-seq
WGBS
Hi-C
pCHi-C
RRBS
STARR-seq
DNase-seq
whole genome sequencing assay
cell line
HepG2
69
1
2
2
2
1
tissue
liver
43
3
1
1
1
right lobe of liver
3
1
1
primary cell
hepatocyte
1
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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