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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
88
ChIP-seq
36
DNase-seq
8
ATAC-seq
1
GRO-seq
Assay category
88
DNA binding
44
DNA accessibility
Transcription
Target of assay
61
histone
61
histone modification
38
broad histone mark
24
control
23
narrow histone mark
3
transcription factor
Date released
65
October, 2019
32
June, 2019
13
December, 2017
9
February, 2018
7
May, 2019
6
February, 2021
July, 2019
1
January, 2018
Available data
131
bam
106
bed narrowPeak
101
bigWig
84
bigBed narrowPeak
39
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
23
fastq
Organism
133
Homo sapiens
Biosample type
110
tissue
23
in vitro differentiated cells
Organ
595
liver
465
pancreas
315
epithelium
255
brain
224
kidney
213
heart
201
connective tissue
162
vasculature
157
blood vessel
110
limb
97
bone element
90
adipose tissue
82
artery
81
musculature of body
69
blood
69
bodily fluid
41
eye
38
nerve
25
spleen
23
embryo
22
vein
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lung
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
133
AMP
Genome assembly (visualization)
107
hg19
106
GRCh38
1
hg18
Lab
133
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
assay_slims!
Transcription
award.project!
LungMap
month_released!
July, 2019
BIOSAMPLE
ASSAY
133 results
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ChIP-seq
DNase-seq
ATAC-seq
GRO-seq
tissue
tibial nerve
35
2
1
tibial artery
23
2
1
muscle of leg
7
13
muscle of arm
17
distal epiphysis of femur
1
+ See 8 more…
in vitro differentiated cells
pancreatic endoderm
18
1
Hepatic endoderm
4
See all biosamples
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