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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
195
ChIP-seq
193
ATAC-seq
48
snATAC-seq
47
WGBS
31
DNase-seq
10
RRBS
9
Hi-C
1
DNAme array
1
FAIRE-seq
1
pCHi-C
Assay category
Transcription
273
DNA accessibility
195
DNA binding
58
DNA methylation
9
3D chromatin structure
Target of assay
153
histone
153
histone modification
78
broad histone mark
75
narrow histone mark
32
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
101
May, 2022
100
May, 2020
59
August, 2017
55
June, 2019
51
May, 2021
46
September, 2018
35
February, 2021
32
October, 2019
13
July, 2019
12
February, 2023
9
November, 2017
August, 2020
5
May, 2019
5
September, 2017
4
August, 2021
3
October, 2022
3
September, 2020
2
November, 2020
1
March, 2020
March, 2023
Available data
273
bam
268
bigWig
211
bed narrowPeak
154
fastq
109
bigBed narrowPeak
101
zippedFastqFolder
49
bed broadPeak
49
bigBed broadPeak
35
bed bed3+
18
tsv
16
tagAlign
10
bed bedMethyl
10
bigBed bedMethyl
5
hic
4
bedpe bed3+
4
hdf5
3
cool
1
bed bed3
1
tar
Organism
536
Homo sapiens
Biosample type
1526
tissue
540
cell line
536
primary cell
256
in vitro differentiated cells
8
stem cell
Organ
236
epithelium
184
pancreas
35
vasculature
30
kidney
29
blood vessel
23
connective tissue
22
vein
18
brain
12
musculature of body
9
heart
9
liver
5
eye
Project
396
AMP
140
HPAP
T1D
Genome assembly (visualization)
290
hg19
192
GRCh38
Lab
363
AMP-T2D consortium
140
Klaus Kaestner, Upenn
33
Kyle Gaulton, UCSD
Audit category:
42
inconsistent ontology term
31
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
assay_slims!
Transcription
award.project!
T1D
month_released!
August, 2020
March, 2023
BIOSAMPLE
ASSAY
536 results
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ChIP-seq
ATAC-seq
snATAC-seq
WGBS
DNase-seq
RRBS
Hi-C
DNAme array
FAIRE-seq
pCHi-C
primary cell
pancreatic alpha cell
13
30
31
1
pancreatic beta cell
13
21
16
1
Langerhans cell
48
CD8-positive, alpha-beta T cell
33
2
naive thymus-derived CD4-positive, alpha-beta T cell
2
22
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