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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
ChIP-seq
33
DNase-seq
7
Hi-C
5
RRBS
1
ATAC-seq
1
WGBS
1
pCHi-C
1
snATAC-seq
Assay category
39
DNA binding
35
DNA accessibility
Transcription
7
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
43
June, 2019
26
August, 2017
October, 2019
7
May, 2019
6
July, 2019
4
March, 2020
1
January, 2018
1
May, 2022
Available data
62
bigWig
60
bed narrowPeak
51
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
4
bed bedMethyl
4
bigBed bedMethyl
3
bedpe bed3+
3
hic
2
fastq
1
tsv
1
txt
Organism
88
Homo sapiens
Biosample type
75
tissue
13
primary cell
Organ
592
liver
424
pancreas
289
epithelium
221
heart
205
kidney
198
connective tissue
177
brain
122
vasculature
116
blood vessel
96
bone element
89
adipose tissue
87
musculature of body
61
blood
61
bodily fluid
57
artery
50
limb
35
eye
25
spleen
23
embryo
18
ureter
12
skeleton
11
lung
2
intestine
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
small intestine
1
stomach
1
thymus
1
urinary bladder
1
vein
Project
88
AMP
Genome assembly (visualization)
68
hg19
47
GRCh38
Lab
88
AMP-T2D consortium
Audit category:
9
inconsistent ontology term
1
audit script error
assay_slims!
Transcription
award.project!
T1D
month_released!
October, 2019
BIOSAMPLE
ASSAY
88 results
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ChIP-seq
DNase-seq
Hi-C
RRBS
ATAC-seq
WGBS
pCHi-C
snATAC-seq
tissue
skeletal muscle tissue
22
4
1
1
muscle of leg
7
13
1
muscle of arm
17
gastrocnemius medialis
4
psoas muscle
2
1
+ See 2 more…
primary cell
skeletal muscle satellite cell
8
skeletal muscle cell
2
1
1
endothelial cell of umbilical vein
1
See all biosamples
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